Biomedical & Clinical Informatics Lab

Department of Computational Medicine & Bioinformatics

Publications

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2017
Kratz A., Ansari S., Duda M., Chen X., Murphy J., Bay E., Williams D., Clauw D., Najarian K.  2017.  Ambulatory heart rate variability identifies differences in sleep between people with fibromyalgia and matched controls. The Journal of Pain. 18:S54.
Karimi M, Nejati M, Samavi S, Karimi N, Najarian K.  2017.  Blind Stereo Quality Assessment Based on Learned Features from Binocular Combined Images. IEEE Transactions on Multimedia. :1–1.
Jafari MH, Nasr-Esfahani E, Karimi N, Samavi S, Najarian K.  2017.  Extraction of skin lesions from non-dermoscopic images for surgical excision of melanoma. International Journal of Computer Assisted Radiology and Surgery.
Kratz A., Ansari S., Duda M., Chen X., Murphy J., Williams D., Najarian K., Clauw D.  2017.  Feasibility of the E4 Wristband to assess sleep in adults with and without fibromyalgia. The Journal of Pain. 18:S54.
Etemad E, Samavi S, Soroushmehr SMReza, Karimi N, Etemad M, Shirani S, Najarian K.  2017.  Robust image watermarking scheme using bit-plane of hadamard coefficients. Multimedia Tools and Applications. :1–23.
Nejati M, Samavi S, Karimi N, Soroushmehr S.M.R, Shirani S, Najarian K.  2017.  Surface area-based focus criterion for multi-focus image fusion. Information Fusion.
Biwer C, Rothberg A, IglayReger H, Derksen H, Burant CF, Najarian K.  2017.  Windowed persistent homology: A topological signal processing algorithm applied to clinical obesity data. PLOS ONE. 12:e0177696.
2016
Nejati M, Samavi S, Karimi N, Najarian K.  2016.  Boosted Dictionary Learning for Image Compression. IEEE Transactions on Image Processing.
Nejati M, Samavi S, Derksen H, Najarian K.  2016.  Denoising by Low-Rank and Sparse Representations. Journal of Visual Communication and Image Representation.
Heidari M, Samavi S, Soroushmehr SMR, Shirani S, Karimi N, Najarian K.  2016.  Framework for robust blind image watermarking based on classification of attacks. Multimedia Tools and Applications. :1–21.
Nasr-Esfahani E, Karimi N, Soroushmehr SM, M Jafari H, M Khorsandi A, Samavi S, Najarian K.  2016.  Hand Gesture Recognition for Contactless Device Control in Operating Rooms. arXiv preprint arXiv:1611.04138.
Shandilya S, Kurz MC, Ward KR, Najarian K.  2016.  Integration of Attributes from Non-Linear Characterization of Cardiovascular Time-Series for Prediction of Defibrillation Outcomes. PloS one. 11
Ansari S, Ward K, Najarian K.  2016.  Motion Artifact Suppression in Impedance Pneumography Signal for Portable Monitoring of Respiration: an Adaptive Approach.
Karimi M, Samavi S, Karimi N, Soroushmehr SMReza, Lin W, Najarian K.  2016.  Quality Assessment of Retargeted Images by Salient Region Deformity Analysis. Journal of Visual Communication and Image Representation.
Belle A, Ansari S, Spadafore M, Convertino VA, Ward KR, Derksen H, Najarian K.  2016.  A Signal Processing Approach for Detection of Hemodynamic Instability before Decompensation. PloS one. 11:e0148544.
Ansari S, Belle A, Ghanbari H, Salamango M, Najarian K.  2016.  Suppression of false arrhythmia alarms in the ICU: a machine learning approach. Physiological Measurement. 37:1186–1203.
Nejati M, Samavi S, Karimi N, Soroushmehr SMR, Shirani S, Rosta I, Najarian K.  2016.  Surface Area-Based Focus Criterion for Multi-Focus Image Fusion. Information Fusion.
Heidt ST, Kratz A, Najarian K, Hassett AL,.  2016.  Symptoms In Atrial Fibrillation: A Contemporary Review And Future Directions. Journal of Atrial Fibrillation. 9
Karimi N, Samavi S, Soroushmehr S.MReza, Shirani S, Najarian K.  2016.  Toward Practical Guideline for Design of Image Compression Algorithms for Biomedical Applications. Expert Systems and Applications.
Soroushmehr SMReza, Najarian K.  2016.  Transforming big data into computational models for personalized medicine and health care. Dialogues in Clinical Neuroscience. 18:339.
2015
Belle A, Thiagarajan R, Soroushmehr SM, Navidi F, Beard DA, Najarian K.  2015.  Big Data Analytics in Healthcare. BioMed research international. 2015
Najarian K, Ward KR, Shirani S.  2015.  Biomedical Signal and Image Processing for Clinical Decision Support Systems 2014. Computational and mathematical methods in medicine. 2015
Soroushmehr SMReza, Bafna A, Shashank S, Brahmajee N, Ward K, Najarian K.  2015.  Computer-assisted Diagnosis of Coronary Angiography. Circulation. 132:A15456–A15456.
Attin M, Wang L, Soroushmehr SMReza, Lin C-D, Lemus H, Spadafore M, Najarian K.  2015.  Digitization of Electrocardiogram From Telemetry Prior to In-hospital Cardiac Arrest A Pilot Study. Biological research for nursing. :1099800415602092.
Attin M, Feld G, Lemus H, Najarian K, Shandilya S, Wang L, Sabouriazad P, Lin C-D.  2015.  Electrocardiogram characteristics prior to in-hospital cardiac arrest. Journal of clinical monitoring and computing. 29:385–392.
Ansari S, Ward K, Najarian K.  2015.  Epsilon-Tube Filtering: Reduction of High-Amplitude Motion Artifacts From Impedance Plethysmography Signal. Biomedical and Health Informatics, IEEE Journal of. 19:406–417.
Ansari S, Slavin D, Tiba MH, Derksen H, Oldham K, Ward K, Najarian K.  2015.  A Novel Portable Polyvinylidene Fluoride Based Sensor for Detection of Hemorrhage. Circulation. 132:A18257.
Afghah F, Razi A, Najarian K.  2015.  A Shapley Value Solution to Game Theoretic-based Feature Reduction in False Alarm Detection. arXiv preprint arXiv:1512.01680.
Soroushmehr SMReza, Davuluri P, Molaei S, Hargraves RHobson, Tang Y, Cockrell CH, Ward K, Najarian K.  2015.  Spleen Segmentation and Assessment in CT Images for Traumatic Abdominal Injuries. Journal of medical systems. 39:1–11.
2014
Wu J, Belle A, Hargraves RH, Cockrell C, Tang Y, Najarian K.  2014.  Bone segmentation and 3D visualization of CT images for traumatic pelvic injuries. International Journal of Imaging Systems and Technology. 24:29–38.
Shandilya S, Sabouriazad P, Attin M, Najarian K.  2014.  Time Series Feature Extraction and Machine Learning for Prediction of In-Hospital Cardiac Arrest. Circulation. 130:A19524–A19524.
2013
Chen W, Belle A, Cockrell C, Ward KR, Najarian K.  2013.  Automated midline shift and intracranial pressure estimation based on brain CT images. Journal of Visualized Experiments : JoVE.
Najarian K, Deriche R, Kon MA, ST Hirata N.  2013.  Bioinformatics and Biomedical Informatics. The Scientific World Journal. 2013
Belle A, Kon MA, Najarian K.  2013.  Biomedical informatics for computer-aided decision support systems: a survey.. ScientificWorldJournal. 2013:769639.
Oswal V, Belle A, Diegelmann R, Najarian K.  2013.  An entropy-based automated cell nuclei segmentation and quantification: application in analysis of wound healing process.. Comput Math Methods Med. 2013:592790.
Ji S-Y, Belle A, Ward KR, Ryan KL, Rickards CA, Convertino VA, Najarian K.  2013.  Heart rate variability analysis during central hypovolemia using wavelet transformation.. J Clin Monit Comput. 27(3):289-302.
Luo Y, Hargraves RH, Belle A, Bai O, Qi X, Ward KR, Pfaffenberger M.P., Najarian K.  2013.  A hierarchical method for removal of baseline drift from biomedical signals: application in ECG analysis.. ScientificWorldJournal. 2013:896056.
Qi X, Belle A, Shandilya S, Chen W, Cockrell CH, Tang Y, Ward KR, Hargraves RHobson, Najarian K.  2013.  Ideal Midline Detection Using Automated Processing of Brain CT Image. Open Journal of Medical Imaging.
Aghazadeh B.S., Khaleghi M, Pidaparti R, Najarian K.  2013.  Intracranial pressure (ICP) level estimation using textural features of brain CT images. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization. 1:130–137.
Aghazadeh BS, Ansari S, Pidaparti R, Najarian K.  2013.  Non-invasive estimation of intracranial pressure in traumatic brain injury (TBI) using fully-anisotropic Morlet wavelet transform and support vector regression. Biomedical Engineering Letters. 3:190-197.
Chen W, Cockrell CH, Ward K, Najarian K.  2013.  Predictability of intracranial pressure level in traumatic brain injury: features extraction, statistical analysis and machine learning-based evaluation.. Int J Data Min Bioinform. 8(4):480-94.
2012
Demir SU, Hakimzadeh R, Hargraves RHobson, Ward KR, Myer EV, Najarian K.  2012.  An automated method for analysis of microcirculation videos for accurate assessment of tissue perfusion.. BMC Med Imaging. 12:37.
Belle A, Hargraves RHobson, Najarian K.  2012.  An automated optimal engagement and attention detection system using electrocardiogram.. Comput Math Methods Med. 2012:528781.
Wu J, Davuluri P, Ward KR, Cockrell C, Hobson R, Najarian K.  2012.  Fracture Detection in Traumatic Pelvic CT Images.. Int J Biomed Imaging. 2012:327198.
Davuluri P, Wu J, Tang Y, Cockrell CH, Ward KR, Najarian K, Hargraves RH.  2012.  Hemorrhage detection and segmentation in traumatic pelvic injuries.. Comput Math Methods Med. 2012:898430.
Shandilya S, Ward K, Kurz M, Najarian K.  2012.  Non-linear dynamical signal characterization for prediction of defibrillation success through machine learning.. BMC Med Inform Decis Mak. 12:116.
Manjili MH, Najarian K, Wang X-Y.  2012.  Signatures of tumor-immune interactions as biomarkers for breast cancer prognosis.. Future Oncol. 8(6):703-11.
2011
Mirshahi N, Demir S, Ward K, Hobson R, Hakimzadeh R, Najarian K.  2011.  An adaptive entropic thresholding technique for image processing and diagnostic analysis of microcirculation videos. International Journal On Advances in Life Sciences. 2:133–142.
2010
Vasilache S, Mirshahi N, Ji S-Y, Mottonen J, Jacobs DJ, Najarian K.  2010.  A signal processing method to explore similarity in protein flexibility.. Adv Bioinformatics. :454671.

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