Biomedical & Clinical Informatics Lab

Department of Computational Medicine & Bioinformatics


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Reamaroon N, Sjoding MW, Lin K, Iwashyna TJ, Najarian K.  2018.  Accounting for Label Uncertainty in Machine Learning for Detection of Acute Respiratory Distress Syndrome. IEEE Journal of Biomedical and Health Informatics. :1-1.
Mathis MR, Kheterpal S, Najarian K.  2018.  Artificial Intelligence for Anesthesia: What the Practicing Clinician Needs to Know: More than Black Magic for the Art of the Dark.. Anesthesiology.
Kalinin AA, Higgins GA, Reamaroon N, Soroushmehr SMR, Allyn-Feuer A, Dinov ID, Najarian K, Athey BD.  2018.  Deep learning in pharmacogenomics: from gene regulation to patient stratification.. Pharmacogenomics. 19(7):629-650.
Zare F, Ansari S, Najarian K, Nabavi S.  2018.  Preprocessing Sequence Coverage Data for Precise Detection of Copy Number Variations. IEEE/ACM Transactions on Computational Biology and Bioinformatics.
Kratz A., Ansari S., Duda M., Chen X., Murphy J., Bay E., Williams D., Clauw D., Najarian K.  2017.  Ambulatory heart rate variability identifies differences in sleep between people with fibromyalgia and matched controls. The Journal of Pain. 18:S54.
Karimi M, Nejati M, Samavi S, Karimi N, Najarian K.  2017.  Blind Stereo Quality Assessment Based on Learned Features from Binocular Combined Images. IEEE Transactions on Multimedia. :1–1.
Jafari MH, Nasr-Esfahani E, Karimi N, Samavi S, Najarian K.  2017.  Extraction of skin lesions from non-dermoscopic images for surgical excision of melanoma. International Journal of Computer Assisted Radiology and Surgery.
Ghanbari H., Ansari S., Ghannam M., Lathkar-Pradhan S., Kratz A., Oral H., Najarian K., Clauw D., Nallamothu B..  2017.  Feasibility and usability of a mobile application to assess symptoms and affect in patients with atrial fibrillation: A pilot study. Hypertension. 10(2):9-12.
Kratz A., Ansari S., Duda M., Chen X., Murphy J., Williams D., Najarian K., Clauw D.  2017.  Feasibility of the E4 Wristband to assess sleep in adults with and without fibromyalgia. The Journal of Pain. 18:S54.
Ansari S., Farzaneh N., Duda M., Horan K., Andersson H.B, Goldberger Z.D, Nallamothu B.K, Najarian K..  2017.  A review of automated methods for detection of myocardial ischemia and infarction using electrocardiogram and electronic health records. IEEE Reviews in Biomedical Engineering. 10:264-298.
Etemad E, Samavi S, Soroushmehr SMReza, Karimi N, Etemad M, Shirani S, Najarian K.  2017.  Robust image watermarking scheme using bit-plane of hadamard coefficients. Multimedia Tools and Applications. :1–23.
Nejati M, Samavi S, Karimi N, Soroushmehr S.M.R, Shirani S, Najarian K.  2017.  Surface area-based focus criterion for multi-focus image fusion. Information Fusion.
Biwer C, Rothberg A, IglayReger H, Derksen H, Burant CF, Najarian K.  2017.  Windowed persistent homology: A topological signal processing algorithm applied to clinical obesity data. PLOS ONE. 12:e0177696.
Nejati M, Samavi S, Karimi N, Najarian K.  2016.  Boosted Dictionary Learning for Image Compression. IEEE Transactions on Image Processing.
Nejati M, Samavi S, Derksen H, Najarian K.  2016.  Denoising by Low-Rank and Sparse Representations. Journal of Visual Communication and Image Representation.
Heidari M, Samavi S, Soroushmehr SMR, Shirani S, Karimi N, Najarian K.  2016.  Framework for robust blind image watermarking based on classification of attacks. Multimedia Tools and Applications. :1–21.
Nasr-Esfahani E, Karimi N, Soroushmehr SM, M Jafari H, M Khorsandi A, Samavi S, Najarian K.  2016.  Hand Gesture Recognition for Contactless Device Control in Operating Rooms. arXiv preprint arXiv:1611.04138.
Shandilya S, Kurz MC, Ward KR, Najarian K.  2016.  Integration of Attributes from Non-Linear Characterization of Cardiovascular Time-Series for Prediction of Defibrillation Outcomes. PloS one. 11
Ansari S, Ward K, Najarian K.  2016.  Motion Artifact Suppression in Impedance Pneumography Signal for Portable Monitoring of Respiration: an Adaptive Approach.
Karimi M, Samavi S, Karimi N, Soroushmehr SMReza, Lin W, Najarian K.  2016.  Quality Assessment of Retargeted Images by Salient Region Deformity Analysis. Journal of Visual Communication and Image Representation.
Belle A, Ansari S, Spadafore M, Convertino VA, Ward KR, Derksen H, Najarian K.  2016.  A Signal Processing Approach for Detection of Hemodynamic Instability before Decompensation. PloS one. 11:e0148544.
Ansari S, Belle A, Ghanbari H, Salamango M, Najarian K.  2016.  Suppression of false arrhythmia alarms in the ICU: a machine learning approach. Physiological Measurement. 37:1186–1203.
Nejati M, Samavi S, Karimi N, Soroushmehr SMR, Shirani S, Rosta I, Najarian K.  2016.  Surface Area-Based Focus Criterion for Multi-Focus Image Fusion. Information Fusion.
Heidt ST, Kratz A, Najarian K, Hassett AL,.  2016.  Symptoms In Atrial Fibrillation: A Contemporary Review And Future Directions. Journal of Atrial Fibrillation. 9
Karimi N, Samavi S, Soroushmehr S.MReza, Shirani S, Najarian K.  2016.  Toward Practical Guideline for Design of Image Compression Algorithms for Biomedical Applications. Expert Systems and Applications.
Soroushmehr SMReza, Najarian K.  2016.  Transforming big data into computational models for personalized medicine and health care. Dialogues in Clinical Neuroscience. 18:339.
Belle A, Thiagarajan R, Soroushmehr SM, Navidi F, Beard DA, Najarian K.  2015.  Big Data Analytics in Healthcare. BioMed research international. 2015
Najarian K, Ward KR, Shirani S.  2015.  Biomedical Signal and Image Processing for Clinical Decision Support Systems 2014. Computational and mathematical methods in medicine. 2015
Soroushmehr SMReza, Bafna A, Shashank S, Brahmajee N, Ward K, Najarian K.  2015.  Computer-assisted Diagnosis of Coronary Angiography. Circulation. 132:A15456–A15456.
Attin M, Wang L, Soroushmehr SMReza, Lin C-D, Lemus H, Spadafore M, Najarian K.  2015.  Digitization of Electrocardiogram From Telemetry Prior to In-hospital Cardiac Arrest A Pilot Study. Biological research for nursing. :1099800415602092.
Attin M, Feld G, Lemus H, Najarian K, Shandilya S, Wang L, Sabouriazad P, Lin C-D.  2015.  Electrocardiogram characteristics prior to in-hospital cardiac arrest. Journal of clinical monitoring and computing. 29:385–392.
Ansari S, Ward K, Najarian K.  2015.  Epsilon-Tube Filtering: Reduction of High-Amplitude Motion Artifacts From Impedance Plethysmography Signal. Biomedical and Health Informatics, IEEE Journal of. 19:406–417.
Ansari S., Ward K., Najarian K..  2015.  Epsilon-tube filtering: Reduction of high-amplitude motion artifacts from impedance plethysmography signal. IEEE Journal of Biomedical and Health Informatics. 19(2):406-417.
Ansari S, Slavin D, Tiba MH, Derksen H, Oldham K, Ward K, Najarian K.  2015.  A Novel Portable Polyvinylidene Fluoride Based Sensor for Detection of Hemorrhage. Circulation. 132:A18257.
Afghah F, Razi A, Najarian K.  2015.  A Shapley Value Solution to Game Theoretic-based Feature Reduction in False Alarm Detection. arXiv preprint arXiv:1512.01680.
Soroushmehr SMReza, Davuluri P, Molaei S, Hargraves RHobson, Tang Y, Cockrell CH, Ward K, Najarian K.  2015.  Spleen Segmentation and Assessment in CT Images for Traumatic Abdominal Injuries. Journal of medical systems. 39:1–11.
Wu J, Belle A, Hargraves RH, Cockrell C, Tang Y, Najarian K.  2014.  Bone segmentation and 3D visualization of CT images for traumatic pelvic injuries. International Journal of Imaging Systems and Technology. 24:29–38.
Shandilya S, Sabouriazad P, Attin M, Najarian K.  2014.  Time Series Feature Extraction and Machine Learning for Prediction of In-Hospital Cardiac Arrest. Circulation. 130:A19524–A19524.
Chen W, Belle A, Cockrell C, Ward KR, Najarian K.  2013.  Automated midline shift and intracranial pressure estimation based on brain CT images. Journal of Visualized Experiments : JoVE.
Najarian K, Deriche R, Kon MA, ST Hirata N.  2013.  Bioinformatics and Biomedical Informatics. The Scientific World Journal. 2013
Belle A, Kon MA, Najarian K.  2013.  Biomedical informatics for computer-aided decision support systems: a survey.. ScientificWorldJournal. 2013:769639.
Oswal V, Belle A, Diegelmann R, Najarian K.  2013.  An entropy-based automated cell nuclei segmentation and quantification: application in analysis of wound healing process.. Comput Math Methods Med. 2013:592790.
Ji S-Y, Belle A, Ward KR, Ryan KL, Rickards CA, Convertino VA, Najarian K.  2013.  Heart rate variability analysis during central hypovolemia using wavelet transformation.. J Clin Monit Comput. 27(3):289-302.
Luo Y, Hargraves RH, Belle A, Bai O, Qi X, Ward KR, Pfaffenberger M.P., Najarian K.  2013.  A hierarchical method for removal of baseline drift from biomedical signals: application in ECG analysis.. ScientificWorldJournal. 2013:896056.
Qi X, Belle A, Shandilya S, Chen W, Cockrell CH, Tang Y, Ward KR, Hargraves RHobson, Najarian K.  2013.  Ideal Midline Detection Using Automated Processing of Brain CT Image. Open Journal of Medical Imaging.
Aghazadeh B.S., Khaleghi M, Pidaparti R, Najarian K.  2013.  Intracranial pressure (ICP) level estimation using textural features of brain CT images. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization. 1:130–137.
Aghazadeh BS, Ansari S, Pidaparti R, Najarian K.  2013.  Non-invasive estimation of intracranial pressure in traumatic brain injury (TBI) using fully-anisotropic Morlet wavelet transform and support vector regression. Biomedical Engineering Letters. 3:190-197.
Aghazadeh B.S, Ansari S., Pidaparti R., Najarian K..  2013.  Non-invasive estimation of intracranial pressure in traumatic brain injury (TBI) using fully-anisotropic Morlet wavelet transform and support vector regression. Biomedical Engineering Letters. 3(3):190-197.
Chen W, Cockrell CH, Ward K, Najarian K.  2013.  Predictability of intracranial pressure level in traumatic brain injury: features extraction, statistical analysis and machine learning-based evaluation.. Int J Data Min Bioinform. 8(4):480-94.
Demir SU, Hakimzadeh R, Hargraves RHobson, Ward KR, Myer EV, Najarian K.  2012.  An automated method for analysis of microcirculation videos for accurate assessment of tissue perfusion.. BMC Med Imaging. 12:37.