Biomedical & Clinical Informatics Lab

Department of Computational Medicine & Bioinformatics

Publications

Export 284 results:
2019
Yao H, Williamson C, Gryak J, Najarian K.  2019.  Brain Hematoma Segmentation Using Active Learning and an Active Contour Model. 7th International Work-Conference on Bioinformatics and Biomedical Engineering.
Sabeti E, Gryak J, Derksen H, Biwer C, Ansari S, Isenstein H, Kratz A, Najarian K.  2019.  Learning Using Concave and Convex Kernels: Applications in Predicting Quality of Sleep and Level of Fatigue in Fibromyalgia. Entropy. 21(5):442.
Gribov A, Horan K, Gryak J, Najarian K, Shpilrain V, Soroushmehr R, Kahrobaei D.  2019.  Medical Diagnostics Based on Encrypted Medical Data. International Conference on Bio-inspired Information and Communication.
Wood A, Shpilrain V, Najarian K, Kahrobaei D.  2019.  Private naive bayes classification of personal biomedical data: Application in cancer data analysis. Computers in Biology and Medicine. 105:144–150.
Sabeti E, Reamaroon N, Mathis M, Gryak J, Sjoding M, Najarian K.  2019.  Signal quality measure for pulsatile physiological signals using morphological features: Applications in reliability measure for pulse oximetry. Informatics in Medicine Unlocked. 16:100222.
2018
Reamaroon N, Sjoding MW, Lin K, Iwashyna TJ, Najarian K.  2018.  Accounting for Label Uncertainty in Machine Learning for Detection of Acute Respiratory Distress Syndrome. IEEE Journal of Biomedical and Health Informatics. 23(1):407-415.
Ansari S, Najarian K, Ward K.  2018.  Adaptive epsilon-tube filter for blunt noise removal.
Mathis MR, Kheterpal S, Najarian K.  2018.  Artificial Intelligence for Anesthesia: What the Practicing Clinician Needs to Know: More than Black Magic for the Art of the Dark. Anesthesiology. 129(4):619-622.
Li Z, Derksen H, Gryak J, Ghanbari H, Gunaratne P, Najarian K.  2018.  Atrial Fibrillation Prediction Using Recordings from Portable Devices. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Najarian K, Soroushmehr S, Ward KR, Nallamothu BK.  2018.  Automated analysis of vasculature in coronary angiograms.
Soroushmehr SMR, Curzen N, Wood A, Nallamothu B, Gryak J, Najarian K.  2018.  Automated Decision Support System for Stenosis Detection in Coronary Angiograms.
Farzaneh N, Soroushmehr SMR, Patel H, Wood A, Gryak J, Fessell D, Najarian K.  2018.  Automated Kidney Segmentation for Traumatic Injured Patients through Ensemble Learning and Active. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Yao H, Gryak J, Attili A, Derksen H, Najarian K.  2018.  Automatic Left Ventricle Segmentation Using Dilated and Adversarial Convolutional Neural Network.
Hooshmand M, Soroushmehr SMR, Williamson C, Gryak J, Najarian K.  2018.  Automatic Midline Shift Detection in Traumatic Brain Injury. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Alge O, Gryak J, Hua Y, Najarian K.  2018.  Classifying Osteosarcoma Using Meta-Analysis of Gene Expression. 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
Nguyen A, Ansari S, Hooshmand M, Lin K, Ghanbari H, Gryak J, Najarian K.  2018.  Comparative Study on Heart Rate Variability Analysis for Atrial Fibrillation Detection in Short Single-Lead ECG Recordings. Engineering in Medicine and Biology Society, EMBC.
Hooshmand M, Soroushmehr SMR, Williamson C, Gryak J, Najarian K.  2018.  Computing Amount of Midline Shift in Traumatic Brain Injury.
Kalinin AA, Higgins GA, Reamaroon N, Soroushmehr SMR, Allyn-Feuer A, Dinov ID, Najarian K, Athey BD.  2018.  Deep learning in pharmacogenomics: from gene regulation to patient stratification. Pharmacogenomics. 19(7):629-650.
Najarian K, Belle A, Ward K, Derksen H.  2018.  Early detection of hemodynamic decompensation using taut-string transformation.
Horan K, Soroushmehr R, Gunaratne P, Ebe K, Najarian K.  2018.  Feasibility Study For In-Vehicle Detection of Severe Cardiac Events. International Journal of Automotive Engineering. 9(4):316–322.
Yao H, Zhang W, Malhan R, Gryak J, Najarian K.  2018.  Filter-Pruned 3D Convolutional Neural Network for Drowsiness Detection. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Wood A, Soroushmehr SMR, Farzaneh N, Ward K, Fessell D, Gryak J, Najarian K.  2018.  Fully Automated Spleen Localization and Segmentation Using Machine Learning and 3D Active Contours. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Yao H, Gryak J, Derksen H, Attili AK, Nallamothu BK, Najarian K.  2018.  Fully-Automated Left Ventricle Segmentation Using a Dilated and Adversarial Deep Learning Architecture. 138:A16899–A16899.
Yao H, Gryak J, Derksen H, Attili A, Nallamothu B, Najarian K.  2018.  Fully-Automated Left Ventricle Segmentation Using a Dilated and Adversarial Deep Learning Architecture. 138
Afghah F, Razi A, Soroushmehr R, Ghanbari H, Najarian K.  2018.  Game theoretic approach for systematic feature selection; application in false alarm detection in intensive care units. Entropy. 20(3):190.
Yao H, Williamson C, Soroushmehr SMR, Gryak J., Najarian K.  2018.  Hematoma Segmentation Using Dilated Convolutional Neural Network. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Wang L, Ansari S, Ward KR, Najarian K, Oldham KR.  2018.  Identification of Compensatory Arterial Dynamics in Swine Using a Non-Invasive Sensor for Local Vascular Resistance. Proceedings of the ASME Dynamic Systems and Control Conference ASME.
Ansari S, Gryak J, Najarian K.  2018.  Noise Detection in Electrocardiography Signal for Robust Heart Rate Variability Analysis: A Deep Learning Approach. Engineering in Medicine and Biology Society, EMBC.
Li Z, Derksen H, Gryak J, Ghanbari H, Gunaratne P, Najarian K.  2018.  A Novel Atrial Fibrillation Prediction Algorithm Applicable to Recordings from Portable Devices. 2018 40th Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society ({EMBC}).
Tokcan N, Hernandez L, Derksen H, Gryak J, Najarian K.  2018.  Novel Tensor Similarity Score for Classification of Cardiac Index from ECG Signals.
Shen R, Li Z, Zhang L, Hua Y, Mao M, Li Z, Cai Z, Qiu Y, Gryak J, Najarian K.  2018.  Osteosarcoma Patients Classification Using Plain X-Rays and Metabolomic Data. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Zare F, Ansari S, Najarian K, Nabavi S.  2018.  Preprocessing Sequence Coverage Data for Precise Detection of Copy Number Variations. IEEE/ACM Transactions on Computational Biology and Bioinformatics.
Wood A, Shpilrain V, Najarian K, Kahrobaei D.  2018.  Private Naïve Bayes Classification of Personal Biomedical Data: Application in Cancer Data Analysis.
Wood A, Shpilrain V, Najarian K, Mostashari A, Kahrobaei D.  2018.  Private-Key Fully Homomorphic Encryption for Private Classification. International Congress on Mathematical Software.
Ansari S, Golbus JR, Aaronson KD, Nallamothu BK, Oldham KR, Ward KR, Gryak J, Najarian K.  2018.  Stratification of Cardiac Index Using a Novel Non-Invasive Ring and Deep Learning. 138:A16415–A16415.
Ansari S, Golbus J, Aaronson K, Nallamothu B, Oldham K, Ward K, Gryak J, Najarian K.  2018.  Stratification of Cardiac Index Using a Novel Non-Invasive Ring and Deep Learning. 138
Peyman N, Najarian K.  2018.  System and method for generating heat at target area of patients body.
Wood A, Najarian K, Shpilrain V, Kahrobaei D.  2018.  Third Party Private Search.
Fazlali HR, Karimi N, Soroushmehr SMReza, Shirani S, Nallamothu BK, Ward KR, Samavi S, Najarian K.  2018.  Vessel segmentation and catheter detection in X-ray angiograms using superpixels. Medical & biological engineering & computing. 56(9):1515–1530.
2017
Tavakoli N, Karimi M, Nejati M, Karimi N, Soroushmehr S.M.R, Samavi S, Najarian K.  2017.  Abnormality Detection of Mammograms by Discriminative Dictionary learning on DSIFT Descriptors. IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Kratz A., Ansari S., Duda M., Chen X., Murphy J., Bay E., Williams D., Clauw D., Najarian K.  2017.  Ambulatory heart rate variability identifies differences in sleep between people with fibromyalgia and matched controls. The Journal of Pain. 18(4):S54.
Farzaneh N, Habbo-Gavin S, Soroushmehr S.M.R, Patel H, Fessell D, Ward K, Najarian K.  2017.  Atlas based 3D liver segmentation using adaptive thresholding and superpixel approaches. IEEE International Conference on Acoustics, Speech and Signal Processing.
Yao H, Soroushmehr S.M.R, Williamson CA, Ward KR, Farzaneh N, Najarian K.  2017.  Automated Decision Support System to Detect and Evaluate the Hematoma in Patients with Acute Traumatic Brain Injury.
Farzaneh N, Soroushmehr S.M.R, Williamson CA, Jiang C, Srinivasan A, Bapuraj JR, Yao H, Ward KR, Korley F, Najarian K.  2017.  Automated Decision Support System to Quantitatively Evaluate the Volume of Subdural Hematoma in Traumatic Brain Injured Patients.
Farzaneh N, Soroushmehr S.M.R, Williamson C, Jiang C, Srinivasan A, Bapuraj JRajiv, Ward K, Korley FK, Najarian K.  2017.  Automated Subdural Hematoma Segmentation for Traumatic Brain Injured (TBI) Patients. IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Zare F., Ansari S., Najarian K., Nabavi S..  2017.  Bias and noise cancellation for robust copy number variation detection. Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. :591.
Karimi M, Nejati M, Samavi S, Karimi N, Najarian K.  2017.  Blind Stereo Quality Assessment Based on Learned Features from Binocular Combined Images. IEEE Transactions on Multimedia. 19(11):2475-2489.
Li Z, Soroushmehr S.M.R, Hua Y, Mao M, Qiu Y, Najarian K.  2017.  Classifying Osteosarcoma Patients Using Machine Learning Approaches. to be presented in IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Molaei S, Horan K, Nallamothu B, Kahrobaei D, Shiri M, Najarian K.  2017.  Deep Convolutional Neural Networks for Left Ventricle Segmentation. to be presented in IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Farzaneh N, Soroushmehr S.M.R, Williamson CA, Srinivasan A, Bapuraj JR, Yao H, Ward KR, Najarian K.  2017.  Developing an Automated System to Predict ICU Length of Stay for TBI patients with Subdural Hematoma.

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