Biomedical & Clinical Informatics Lab

Department of Computational Medicine & Bioinformatics

Publications

Export 304 results:
2020
Brosset S, Dumont M, Bianchi J, Ruellas A, Cevidanes L, Yatabe M, Gonçalves J, Benavides E, Soki F, Prieto BPaniag Jua et al..  2020.  3D Auto-Segmentation of Mandibular Condyles. 2020 42th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Alge O, Lu L, Li Z, Hua Y, Gryak J, Najarian K.  2020.  Automated Classification of Osteosarcoma and Benign Tumors Using RNA-Seq and Plain X-Ray. 2020 42th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Yao H, Williamson C, Gryak J, Najarian K.  2020.  Automated Hematoma Segmentation and Outcome Prediction for Patients with Traumatic Brain Injury. Artificial Intelligence in Medicine. :101910.
Bagherian M, Kim RB, Jiang C, Sartor MA, Derksen H, Najarian K.  2020.  Coupled matrix–matrix and coupled tensor–matrix completion methods for predicting drug–target interactions. Briefings in Bioinformatics.
Yao H, Najarian K, Gryak J, Bishu S, Rice MD, Waljee AK, H Wilkins J, Stidham RW.  2020.  Fully automated endoscopic disease activity assessment in ulcerative colitis. Gastrointestinal Endoscopy.
Sabeti E, Drews J, Reamaroon N, Warner E, Sjoding MW, Gryak J, Najarian K.  2020.  Learning Using Partially Available Privileged Information and Label Uncertainty: Application in Detection of Acute Respiratory Distress Syndrome. IEEE Journal of Biomedical and Health Informatics.
Bagherian M, Sabeti E, Wang K, Sartor MA, Nikolovska-Coleska Z, Najarian K.  2020.  Machine learning approaches and databases for prediction of drug–target interaction: a survey paper. Briefings in Bioinformatics.
Rajajee V, Soroushmehr R, Williamson CA, Najarian K, Gryak J, Awad A, Ward KR, Tiba MH.  2020.  Novel Algorithm for Automated Optic Nerve Sheath Diameter Measurement Using a Clustering Approach. Military Medicine.
Alge O, Soroushmehr S.M.R, Gryak J, Kratz A, Najarian K.  2020.  Predicting Poor Sleep Quality in Fibromyalgia with Wrist Sensors. 2020 42th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Najarian K, Gryak J, Sabeti E, Drews J.  2020.  SEQUENTIAL MINIMAL OPTIMIZATION ALGORITHM FOR LEARNING USING PARTIALLY AVAILABLE PRIVILEGED INFORMATION.
2019
Yao H, Stidham RW, Soroushmehr R, Gryak J, Najarian K.  2019.  Automated Detection of Non-Informative Frames for Colonoscopy Through a Combination of Deep Learning and Feature Extraction. 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Soroushmehr R, Rajajee K, Williamson C, Gryak J, Najarian K, Ward K, Tiba MH.  2019.  Automated optic nerve sheath diameter measurement using super-pixel analysis. 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Heming YAO, Najarian K, Gryak J, Zhang W.  2019.  Automatic Filter Pruning Technique For Convolutional Neural Networks.
Yao H, Williamson C, Gryak J, Najarian K.  2019.  Brain Hematoma Segmentation Using Active Learning and an Active Contour Model. 7th International Work-Conference on Bioinformatics and Biomedical Engineering.
Sabeti E, Drews J, Reamaroon N, Gryak J, Sjoding M, Najarian K.  2019.  Detection of Acute Respiratory Distress Syndrome by Incorporation of Label Uncertainty and Partially Available Privileged Information. 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Cui C, Thurnhofer-Hemsi K, Soroushmehr R, Mishra A, Gryak J, Domínguez E, Najarian K, López-Rubio E.  2019.  Diabetic Wound Segmentation using Convolutional Neural Networks. 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Sabeti E, Gryak J, Derksen H, Biwer C, Ansari S, Isenstein H, Kratz A, Najarian K.  2019.  Learning Using Concave and Convex Kernels: Applications in Predicting Quality of Sleep and Level of Fatigue in Fibromyalgia. Entropy. 21(5):442.
Li Z, Derksen H, Gryak J, Hooshmand M, Wood A, Ghanbari H, Gunaratne P, Najarian K.  2019.  Markov Models for Detection of Ventricular Arrhythmia. 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Gribov A, Horan K, Gryak J, Najarian K, Shpilrain V, Soroushmehr R, Kahrobaei D.  2019.  Medical Diagnostics Based on Encrypted Medical Data. International Conference on Bio-inspired Information and Communication.
Jiang C, Cao J, Williamson C, Farzaneh N, Rajajee V, Gryak J, Najarian K, Soroushmehr SMReza.  2019.  Midline Shift vs. Mid-Surface Shift: Correlation with Outcome of Traumatic Brain Injuries. 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
Wood A, Shpilrain V, Najarian K, Kahrobaei D.  2019.  Private naive bayes classification of personal biomedical data: Application in cancer data analysis. Computers in Biology and Medicine. 105:144–150.
Sabeti E, Reamaroon N, Mathis M, Gryak J, Sjoding M, Najarian K.  2019.  Signal quality measure for pulsatile physiological signals using morphological features: Applications in reliability measure for pulse oximetry. Informatics in Medicine Unlocked. 16:100222.
Najarian K, Derksen H, Li Z, Gryak J, Gunaratne P.  2019.  Systems and methods for predicting and detecting a cardiac event.
Ghazanfari B, Afghah F, Najarian K, Mousavi S, Gryak J, Todd J.  2019.  An Unsupervised Feature Learning Approach to Reduce False Alarm Rate in ICUs. 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Yao H, Aaronson KD, Lu L, Gryak J, Najarian K, Golbus JR.  2019.  Using a Fuzzy Neural Network in Clinical Decision Support for Patients with Advanced Heart Failure. 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
2018
Reamaroon N, Sjoding MW, Lin K, Iwashyna TJ, Najarian K.  2018.  Accounting for Label Uncertainty in Machine Learning for Detection of Acute Respiratory Distress Syndrome. IEEE Journal of Biomedical and Health Informatics. 23(1):407-415.
Ansari S, Najarian K, Ward K.  2018.  Adaptive epsilon-tube filter for blunt noise removal.
Mathis MR, Kheterpal S, Najarian K.  2018.  Artificial Intelligence for Anesthesia: What the Practicing Clinician Needs to Know: More than Black Magic for the Art of the Dark. Anesthesiology. 129(4):619-622.
Li Z, Derksen H, Gryak J, Ghanbari H, Gunaratne P, Najarian K.  2018.  Atrial Fibrillation Prediction Using Recordings from Portable Devices. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Najarian K, Soroushmehr S, Ward KR, Nallamothu BK.  2018.  Automated analysis of vasculature in coronary angiograms.
Soroushmehr SMR, Curzen N, Wood A, Nallamothu B, Gryak J, Najarian K.  2018.  Automated Decision Support System for Stenosis Detection in Coronary Angiograms.
Farzaneh N, Soroushmehr SMR, Patel H, Wood A, Gryak J, Fessell D, Najarian K.  2018.  Automated Kidney Segmentation for Traumatic Injured Patients through Ensemble Learning and Active. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Yao H, Gryak J, Attili A, Derksen H, Najarian K.  2018.  Automatic Left Ventricle Segmentation Using Dilated and Adversarial Convolutional Neural Network.
Hooshmand M, Soroushmehr SMR, Williamson C, Gryak J, Najarian K.  2018.  Automatic Midline Shift Detection in Traumatic Brain Injury. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Alge O, Gryak J, Hua Y, Najarian K.  2018.  Classifying Osteosarcoma Using Meta-Analysis of Gene Expression. 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
Nguyen A, Ansari S, Hooshmand M, Lin K, Ghanbari H, Gryak J, Najarian K.  2018.  Comparative Study on Heart Rate Variability Analysis for Atrial Fibrillation Detection in Short Single-Lead ECG Recordings. Engineering in Medicine and Biology Society, EMBC.
Hooshmand M, Soroushmehr SMR, Williamson C, Gryak J, Najarian K.  2018.  Computing Amount of Midline Shift in Traumatic Brain Injury.
Kalinin AA, Higgins GA, Reamaroon N, Soroushmehr SMR, Allyn-Feuer A, Dinov ID, Najarian K, Athey BD.  2018.  Deep learning in pharmacogenomics: from gene regulation to patient stratification. Pharmacogenomics. 19(7):629-650.
Najarian K, Belle A, Ward K, Derksen H.  2018.  Early detection of hemodynamic decompensation using taut-string transformation.
Horan K, Soroushmehr R, Gunaratne P, Ebe K, Najarian K.  2018.  Feasibility Study For In-Vehicle Detection of Severe Cardiac Events. International Journal of Automotive Engineering. 9(4):316–322.
Yao H, Zhang W, Malhan R, Gryak J, Najarian K.  2018.  Filter-Pruned 3D Convolutional Neural Network for Drowsiness Detection. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Wood A, Soroushmehr SMR, Farzaneh N, Ward K, Fessell D, Gryak J, Najarian K.  2018.  Fully Automated Spleen Localization and Segmentation Using Machine Learning and 3D Active Contours. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Yao H, Gryak J, Derksen H, Attili A, Nallamothu B, Najarian K.  2018.  Fully-Automated Left Ventricle Segmentation Using a Dilated and Adversarial Deep Learning Architecture. 138
Yao H, Gryak J, Derksen H, Attili AK, Nallamothu BK, Najarian K.  2018.  Fully-Automated Left Ventricle Segmentation Using a Dilated and Adversarial Deep Learning Architecture. 138:A16899–A16899.
Afghah F, Razi A, Soroushmehr R, Ghanbari H, Najarian K.  2018.  Game theoretic approach for systematic feature selection; application in false alarm detection in intensive care units. Entropy. 20(3):190.
Yao H, Williamson C, Soroushmehr SMR, Gryak J., Najarian K.  2018.  Hematoma Segmentation Using Dilated Convolutional Neural Network. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Wang L, Ansari S, Ward KR, Najarian K, Oldham KR.  2018.  Identification of Compensatory Arterial Dynamics in Swine Using a Non-Invasive Sensor for Local Vascular Resistance. Proceedings of the ASME Dynamic Systems and Control Conference ASME.
Ansari S, Gryak J, Najarian K.  2018.  Noise Detection in Electrocardiography Signal for Robust Heart Rate Variability Analysis: A Deep Learning Approach. Engineering in Medicine and Biology Society, EMBC.
Li Z, Derksen H, Gryak J, Ghanbari H, Gunaratne P, Najarian K.  2018.  A Novel Atrial Fibrillation Prediction Algorithm Applicable to Recordings from Portable Devices. 2018 40th Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society ({EMBC}).
Tokcan N, Hernandez L, Derksen H, Gryak J, Najarian K.  2018.  Novel Tensor Similarity Score for Classification of Cardiac Index from ECG Signals.

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