Biomedical & Clinical Informatics Lab

Department of Computational Medicine & Bioinformatics

Publications

Export 269 results:
2018
Reamaroon N, Sjoding MW, Lin K, Iwashyna TJ, Najarian K.  2018.  Accounting for Label Uncertainty in Machine Learning for Detection of Acute Respiratory Distress Syndrome. IEEE Journal of Biomedical and Health Informatics. :1-1.
Mathis MR, Kheterpal S, Najarian K.  2018.  Artificial Intelligence for Anesthesia: What the Practicing Clinician Needs to Know: More than Black Magic for the Art of the Dark.. Anesthesiology.
Li Z, Derksen H, Gryak J, Ghanbari H, Gunaratne P, Najarian K.  2018.  Atrial Fibrillation Prediction Using Recordings from Portable Devices. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Soroushmehr SMR, Curzen N, Wood A, Nallamothu B, Gryak J, Najarian K.  2018.  Automated Decision Support System for Stenosis Detection in Coronary Angiograms.
Farzaneh N, Soroushmehr SMR, Patel H, Wood A, Gryak J, Fessell D, Najarian K.  2018.  Automated Kidney Segmentation for Traumatic Injured Patients through Ensemble Learning and Active. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Yao H, Gryak J, Attili A, Derksen H, Najarian K.  2018.  Automatic Left Ventricle Segmentation Using Dilated and Adversarial Convolutional Neural Network.
Hooshmand M, Soroushmehr SMR, Williamson C, Gryak J, Najarian K.  2018.  Automatic Midline Shift Detection in Traumatic Brain Injury. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Nguyen A, Ansari S, Hooshmand M, Lin K, Ghanbari H, Gryak J, Najarian K.  2018.  Comparative Study on Heart Rate Variability Analysis for Atrial Fibrillation Detection in Short Single-Lead ECG Recordings. Engineering in Medicine and Biology Society, EMBC.
Hooshmand M, Soroushmehr SMR, Williamson C, Gryak J, Najarian K.  2018.  Computing Amount of Midline Shift in Traumatic Brain Injury.
Kalinin AA, Higgins GA, Reamaroon N, Soroushmehr SMR, Allyn-Feuer A, Dinov ID, Najarian K, Athey BD.  2018.  Deep learning in pharmacogenomics: from gene regulation to patient stratification.. Pharmacogenomics. 19(7):629-650.
Wood A, Soroushmehr SMR, Farzaneh N, Ward K, Fessell D, Gryak J, Najarian K.  2018.  Fully Automated Spleen Localization and Segmentation Using Machine Learning and 3D Active Contours. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Yao H, Gryak J, Derksen H, Attili AK, Nallamothu B, Najarian K.  2018.  Fully-Automated Left Ventricle Segmentation Using a Dilated and Adversarial Deep Learning Architecture.
Wang L, Ansari S, Ward KR, Najarian K, Oldham KR.  2018.  Identification of Compensatory Arterial Dynamics in Swine Using a Non-Invasive Sensor for Local Vascular Resistance. Proceedings of the ASME Dynamic Systems and Control Conference ASME.
Ansari S, Gryak J, Najarian K.  2018.  Noise Detection in Electrocardiography Signal for Robust Heart Rate Variability Analysis: A Deep Learning Approach. Engineering in Medicine and Biology Society, EMBC.
Tokcan N, Hernandez L, Derksen H, Gryak J, Najarian K.  2018.  Novel Tensor Similarity Score for Classification of Cardiac Index from ECG Signals.
Shen R, Li Z, Zhang L, Hua Y, Mao M, Li Z, Cai Z, Qiu Y, Gryak J, Najarian K.  2018.  Osteosarcoma Patients Classification Using Plain X-Rays and Metabolomic Data. 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).
Zare F, Ansari S, Najarian K, Nabavi S.  2018.  Preprocessing Sequence Coverage Data for Precise Detection of Copy Number Variations. IEEE/ACM Transactions on Computational Biology and Bioinformatics.
Wood A, Shpilrain V, Najarian K, Kahrobaei D.  2018.  Private Naïve Bayes Classification of Personal Biomedical Data: Application in Cancer Data Analysis.
Wood A, Shpilrain V, Najarian K, Mostashari A, Kahrobaei D.  2018.  Private-Key Fully Homomorphic Encryption for Private Classification. Mathematical Software – ICMS 2018.
Ansari S, Golbus J, Aaronson K, Nallamothu B, Oldham K, Ward K, Gryak J, Najarian K.  2018.  Stratification of Cardiac Index Using a Novel Non-Invasive Ring and Deep Learning.
Wood A, Najarian K, Shpilrain V, Kahrobaei D.  2018.  Third Party Private Search.
2017
Tavakoli N, Karimi M, Nejati M, Karimi N, Soroushmehr S.M.R, Samavi S, Najarian K.  2017.  Abnormality Detection of Mammograms by Discriminative Dictionary learning on DSIFT Descriptors. IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Mohaghegh H, Karimi N, Samavi S, Najarian K.  2017.  Aggregation of Rich Depth Aware Features in a Multi -Level Learning Model for Single Image Depth Estimation. Submitted to IEEE Transactions on Circuits and Systems for Video Technology.
Kratz A., Ansari S., Duda M., Chen X., Murphy J., Bay E., Williams D., Clauw D., Najarian K.  2017.  Ambulatory heart rate variability identifies differences in sleep between people with fibromyalgia and matched controls. The Journal of Pain. 18:S54.
Farzaneh N, Habbo-Gavin S, Soroushmehr S.M.R, Patel H, Fessell D, Ward K, Najarian K.  2017.  Atlas based 3D liver segmentation using adaptive thresholding and superpixel approaches. IEEE International Conference on Acoustics, Speech and Signal Processing.
Yao H, Soroushmehr S.M.R, Williamson CA, Ward KR, Farzaneh N, Najarian K.  2017.  Automated Decision Support System to Detect and Evaluate the Hematoma in Patients with Acute Traumatic Brain Injury.
Farzaneh N, Soroushmehr S.M.R, Williamson CA, Jiang C, Srinivasan A, Bapuraj JR, Yao H, Ward KR, Korley F, Najarian K.  2017.  Automated Decision Support System to Quantitatively Evaluate the Volume of Subdural Hematoma in Traumatic Brain Injured Patients.
Farzaneh N, Soroushmehr S.M.R, Williamson C, Jiang C, Srinivasan A, Bapuraj JRajiv, Ward K, Korley FK, Najarian K.  2017.  Automated Subdural Hematoma Segmentation for Traumatic Brain Injured (TBI) Patients. IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Zare F., Ansari S., Najarian K., Nabavi S..  2017.  Bias and noise cancellation for robust copy number variation detection. Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. :591.
Karimi M, Nejati M, Samavi S, Karimi N, Najarian K.  2017.  Blind Stereo Quality Assessment Based on Learned Features from Binocular Combined Images. IEEE Transactions on Multimedia. :1–1.
Li Z, Soroushmehr S.M.R, Hua Y, Mao M, Qiu Y, Najarian K.  2017.  Classifying Osteosarcoma Patients Using Machine Learning Approaches. to be presented in IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Molaei S, Horan K, Nallamothu B, Kahrobaei D, Shiri M, Najarian K.  2017.  Deep Convolutional Neural Networks for Left Ventricle Segmentation. to be presented in IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Farzaneh N, Soroushmehr S.M.R, Williamson CA, Srinivasan A, Bapuraj JR, Yao H, Ward KR, Najarian K.  2017.  Developing an Automated System to Predict ICU Length of Stay for TBI patients with Subdural Hematoma.
Wang L, Ansari S, Najarian K, Ward K, Oldham K.  2017.  Estimation of Peripheral Artery Radius using Non-Invasive Sensors and Kalman Filtering of Local Dynamics. submitted to American Control Conference.
Ansari S., Molaei S., Oldham K., Heung M., Ward K.R, Najarian K..  2017.  An extended Kalman filter with inequality constraints for real-time detection of intradialytic hypotension. Engineering in Medicine and Biology Society (EMBC). :227-2230.
Jafari MH, Nasr-Esfahani E, Karimi N, Samavi S, Najarian K.  2017.  Extraction of skin lesions from non-dermoscopic images for surgical excision of melanoma. International Journal of Computer Assisted Radiology and Surgery.
Nejati M, Karimi M, Soroushmehr S.M.R, Karimi N, Samavi S, Najarian K.  2017.  Fast Exposure Fusion Using Exposedness Function. IEEE International Conference on Image Processing (ICIP’2017).
Ghanbari H., Ansari S., Ghannam M., Lathkar-Pradhan S., Kratz A., Oral H., Najarian K., Clauw D., Nallamothu B..  2017.  Feasibility and usability of a mobile application to assess symptoms and affect in patients with atrial fibrillation: A pilot study. Hypertension. 10(2):9-12.
Kratz A., Ansari S., Duda M., Chen X., Murphy J., Williams D., Najarian K., Clauw D.  2017.  Feasibility of the E4 Wristband to assess sleep in adults with and without fibromyalgia. The Journal of Pain. 18:S54.
Gunaratne P, Ebe K, Horan K, Najarian K, Soroushmehr S.M.R.  2017.  Feasibility Study for In-Vehicle Detection of Severe Cardiac Events. to appear in FAST-zero symposia.
Hajabdolahi M, Karimi N, Shirani S, Samavi S, Najarian K.  2017.  Hardware Implementation of Adaptive Watermarking Based on Local Spatial Disorder Analysis. submitted to Circuits, Systems, and Signal Processing, Springer.
Ansari S, Molaei S, Oldham K, Heung M, Ward KR, Najarian K.  2017.  A Kalman Filter Approach with State Inequality Constraints for Real-time Prediction of Intradialytic Hypotension using a Polyvinylidene Fluoride Based Sensor. to be presented in IEEE Engineering in Medicine and Biology Society conference (EMBC'17).
Zare F., Ansari S., Najarian K., Nabavi S..  2017.  Noise cancellation for robust copy number variation detection using next generation sequencing data. Bioinformatics and Biomedicine (BIBM).
Wang L, Ansari S, Slavin D, Najarian K, Ward K, Oldham K.  2017.  Non-Invasive Vascular Resistance Monitoring with a Piezoelectric Sensor and Pulse Plethysmograph. submitted to Sensors & Actuators.
Ansari S., Farzaneh N., Duda M., Horan K., Andersson H.B, Goldberger Z.D, Nallamothu B.K, Najarian K..  2017.  A review of automated methods for detection of myocardial ischemia and infarction using electrocardiogram and electronic health records. IEEE Reviews in Biomedical Engineering. 10:264-298.
Etemad E, Samavi S, Soroushmehr SMReza, Karimi N, Etemad M, Shirani S, Najarian K.  2017.  Robust image watermarking scheme using bit-plane of hadamard coefficients. Multimedia Tools and Applications. :1–23.
Nejati M, Samavi S, Karimi N, Soroushmehr S.M.R, Shirani S, Najarian K.  2017.  Surface area-based focus criterion for multi-focus image fusion. Information Fusion.
Fazlali H.R, Soroushmehr S.M.R, Samavi S, Nallamothu BK, Najarian K.  2017.  Vessel Segmentation and Catheter Detection in X-Ray Angiograms Using Superpixels. submitted to Expert Systems with Applications, Elsevier.
Biwer C, Rothberg A, IglayReger H, Derksen H, Burant CF, Najarian K.  2017.  Windowed persistent homology: A topological signal processing algorithm applied to clinical obesity data. PLOS ONE. 12:e0177696.
2016
Jafari MH, Samavi S, Karimi N, Ward K, Najarian K.  2016.  Automatic detection of melanoma using broad extraction of features from digital images. Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the.

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